{ "_id": "6a1f2e23b401979e73426936", "Package": "metajam", "Type": "Package", "Title": "Easily Download Data and Metadata from 'DataONE'", "Version": "0.3.1.9000", "Date": "2024-08-06", "Authors@R": "c(\nperson(\"Julien\", \"Brun\",\nemail = \"julien.brun@alumni.duke.edu\",\ncomment = c(ORCID = \"0000-0002-7751-6238\"),\nrole = c(\"cre\", \"aut\")),\nperson(\"Irene\", \"Steves\",\ncomment = c(ORCID = \"0000-0002-5511-9717\",\n\"https://github.com/isteves\"),\nrole = \"aut\"),\nperson(\"Mitchell\", \"Maier\",\ncomment= c(ORCID = \"0000-0001-6955-0535\"),\nrole = \"aut\"),\nperson(\"Kristen\", \"Peach\",\nemail = \"peach@nceas.ucsb.edu\",\ncomment = c(ORCID = \"0000-0002-6388-0901\"),\nrole = \"aut\"),\nperson(\"Nicholas\", \"Lyon\",\nemail = \"lyon@nceas.ucsb.edu\",\ncomment = c(ORCID = \"0000-0003-3905-1078\",\n\"https://njlyon0.github.io/\"),\nrole = \"aut\"),\nperson(\"Nathan\", \"Hwangbo\",\nemail = \"nathanhwangbo@gmail.com\",\ncomment= c(ORCID = \"0000-0002-3777-0821\"),\nrole = \"ctb\"),\nperson(\"Derek\", \"Strong\",\nemail = \"dstrong@nceas.ucsb.edu\",\ncomment= c(ORCID = \"0000-0002-0347-8574\"),\nrole = \"ctb\"),\nperson(\"Colin\", \"Smith\",\nemail = \"colin.smith@wisc.edu\",\ncomment = c(ORCID = \"0000-0003-2261-9931\"),\nrole = \"ctb\"),\nperson(\"Regents of the University of California\",\nrole = \"cph\")\n)", "Maintainer": "Julien Brun ", "Description": "A set of tools to foster the development of reproducible\nanalytical workflow by simplifying the download of data and\nmetadata from 'DataONE' () and easily\nimporting this information into R.", "License": "Apache License (== 2.0)", "Encoding": "UTF-8", "Language": "en-US", "RoxygenNote": "7.3.2", "SystemRequirements": "Mac OSX: redland (>= 1.0.14) ; Linux: librdf0 (>=\n1.0.14), librdf0-dev (>= 1.0.14)", "URL": "https://nceas.github.io/metajam/, https://github.com/NCEAS/metajam", "BugReports": "https://github.com/NCEAS/metajam/issues", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libicu-dev libjq-dev libuv1-dev\nlibxml2-dev libssl-dev librdf0-dev libnode-dev libx11-dev", "Repository": "https://dataoneorg.r-universe.dev", "Date/Publication": "2024-08-20 20:59:45 UTC", "RemoteUrl": "https://github.com/NCEAS/metajam", "RemoteRef": "HEAD", "RemoteSha": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 09:33:39 UTC", "User": "root" }, "Author": "Julien Brun [cre, aut] (ORCID: ),\nIrene Steves [aut] (ORCID: ,\nhttps://github.com/isteves),\nMitchell Maier [aut] (ORCID: ),\nKristen Peach [aut] (ORCID: ),\nNicholas Lyon [aut] (ORCID: ,\nhttps://njlyon0.github.io/),\nNathan Hwangbo [ctb] (ORCID: ),\nDerek Strong [ctb] (ORCID: ),\nColin Smith [ctb] (ORCID: ),\nRegents of the University of California [cph]", "MD5sum": "4a5b8f5e2e80f7b325e7c1a21c27657b", "_user": "dataoneorg", "_type": "src", "_file": "metajam_0.3.1.9000.tar.gz", "_fileid": "0b719fd042e9fa3f5747c611ebca38f6c17c0074619f4604aa97fe49f03511d4", "_filesize": 2909410, "_sha256": "0b719fd042e9fa3f5747c611ebca38f6c17c0074619f4604aa97fe49f03511d4", "_created": "2026-05-15T09:33:39.000Z", "_published": "2026-06-02T19:25:23.554Z", "_distro": "noble", "_jobs": [ { "job": 79153955576, "time": 152, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7014192500" }, { "job": 79153955501, "time": 164, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7014196497" }, { "job": 79153955377, "time": 110, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7014179669" }, { "job": 79153955232, "time": 145, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7014190565" }, { "job": 79153955205, "time": 214, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7014145765" }, { "job": 79153954552, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367688633" }, { "job": 79153955067, "time": 155, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7014193482" }, { "job": 79153955605, "time": 94, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7014174695" }, { "job": 79153955175, "time": 113, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7014181151" } ], "_buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/NCEAS/metajam", "_commit": { "id": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "author": "Julien Brun ", "committer": "Julien Brun ", "message": "Increment version number to 0.3.1.9000\n", "time": 1724187585 }, "_maintainer": { "name": "Julien Brun", "email": "julien.brun@alumni.duke.edu", "orcid": "0000-0002-7751-6238" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "dataone", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "EML", "role": "Imports" }, { "package": "emld", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "XML", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "nceas", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "data", "data-analysis", "metadata", "repositories" ], "_stars": 16, "_contributors": [ { "user": "brunj7", "count": 278, "uuid": 5761340 }, { "user": "njlyon0", "count": 86, "uuid": 21199610 }, { "user": "isteves", "count": 52, "uuid": 25118334 }, { "user": "maier-m", "count": 15, "uuid": 16710796 }, { "user": "drkrynstrng", "count": 7, "uuid": 36723171 }, { "user": "kristenpeach", "count": 4, "uuid": 36461830 }, { "user": "clnsmth", "count": 2, "uuid": 25492069 }, { "user": "katrinleinweber", "count": 1, "uuid": 9948149 }, { "user": "robyngit", "count": 1, "uuid": 26600641 } ], "_userbio": { "uuid": 5865133, "type": "organization", "name": "DataONE" }, "_downloads": { "count": 21, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/metajam" }, "_devurl": "https://github.com/nceas/metajam", "_pkgdown": "https://nceas.github.io/metajam/", "_searchresults": 81, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/metajam.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_releases": [ { "version": "0.2.3", "date": "2020-11-03" }, { "version": "0.3.0", "date": "2024-07-03" }, { "version": "0.3.1", "date": "2024-08-16" } ], "_exports": [ "check_version", "download_d1_data", "download_d1_data_pkg", "read_d1_files", "tabularize_eml" ], "_help": [ { "page": "check_version", "title": "Check PID version", "topics": [ "check_version" ] }, { "page": "download_d1_data", "title": "Download data and metadata from DataONE", "topics": [ "download_d1_data" ] }, { "page": "download_d1_data_pkg", "title": "Download all data and metadata of a data package from DataONE", "topics": [ "download_d1_data_pkg" ] }, { "page": "read_d1_files", "title": "Read data and metadata based on `download_d1_data()` file structure", "topics": [ "read_d1_files" ] }, { "page": "tabularize_eml", "title": "Get tabular metadata", "topics": [ "tabularize_eml" ] } ], "_readme": "https://github.com/NCEAS/metajam/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "bit", "bit64", "brew", "bslib", "cachem", "callr", "cli", "clipr", "commonmark", "cpp11", "crayon", "curl", "dataone", "datapack", "desc", "digest", "dplyr", "EML", "emld", "evaluate", "fastmap", "fontawesome", "fs", "generics", "glue", "highr", "hms", "htmltools", "httr", "jqr", "jquerylib", "jsonld", "jsonlite", "knitr", "lazyeval", "lifecycle", "lubridate", "magrittr", "memoise", "mime", "openssl", "parsedate", "pillar", "pkgbuild", "pkgconfig", "pkgload", "plyr", "prettyunits", "processx", "progress", "ps", "purrr", "R6", "rappdirs", "Rcpp", "readr", "redland", "rlang", "rmarkdown", "roxygen2", "rprojroot", "sass", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "timechange", "tinytex", "tzdb", "utf8", "uuid", "V8", "vctrs", "vroom", "withr", "xfun", "XML", "xml2", "yaml", "zip" ], "_vignettes": [ { "source": "use01_dataset-single-arctic.Rmd", "filename": "use01_dataset-single-arctic.html", "title": "Use Case 1 - Processing a Single Dataset from Arctic Data Center", "author": "Julien Brun, Mitchell Maier and Irene Steves, NCEAS", "engine": "knitr::rmarkdown", "headings": [ "Summary", "Libraries and constants", "Download the dataset", "Read the data and metadata in your R environment", "Structure of the named list object" ], "created": "2024-04-16 16:23:04", "modified": "2024-04-16 16:23:04", "commits": 1 }, { "source": "use02_dataset-single-dataone.Rmd", "filename": "use02_dataset-single-dataone.html", "title": "Use Case 2 - Processing a Single Dataset from DataOne", "author": "Julien Brun and Kristen Peach, NCEAS", "engine": "knitr::rmarkdown", "headings": [ "Summary", "Note on data url provenance when using download_d1_data.R", "Metadata format dictates metajam output", "Example 1: eml", "Libraries and constants", "Download the dataset", "Read the data and metadata in your R environment", "Structure of the named list object", "Example 2: iso" ], "created": "2024-04-16 16:23:04", "modified": "2024-04-16 16:23:04", "commits": 1 }, { "source": "use03_dataset-batch-processing.Rmd", "filename": "use03_dataset-batch-processing.html", "title": "Use Case 3 - Processing Several Datasets", "author": "Julien Brun, Mitchell Maier, Irene Steves and Kristen Peach, NCEAS", "engine": "knitr::rmarkdown", "headings": [ "Summary", "Libraries", "Constants", "Download the datasets", "Read the data and metadata in your R environment", "Perform checks on data structure", "Conclusion", "Perform checks on the units", "Fixing units discrepancies", "Append all the sampling sites into one master dataset", "General Conclusion" ], "created": "2024-04-16 16:23:04", "modified": "2024-07-02 20:21:19", "commits": 3 }, { "source": "use04_reading-raster.Rmd", "filename": "use04_reading-raster.html", "title": "Use Case 4 - Processing a Raster Dataset", "author": "Julien Brun, Mitchell Maier, Derek Strong and Irene Steves, NCEAS", "engine": "knitr::rmarkdown", "headings": [ "Summary", "Libraries and constants", "Download the raster dataset", "Read the raster file and metadata in your R environment", "Investigate the metadata" ], "created": "2024-04-16 16:23:04", "modified": "2024-04-16 16:23:04", "commits": 1 }, { "source": "use05_package-download.Rmd", "filename": "use05_package-download.html", "title": "Use Case 5 - Downloading Entire Data Packages Using DOIs", "author": "Julien Brun, Mitchell Maier and Irene Steves, NCEAS", "engine": "knitr::rmarkdown", "headings": [ "Summary", "Libraries and constants", "Download all the datasets from data packages using DOIs" ], "created": "2024-04-16 16:23:04", "modified": "2024-04-16 16:23:04", "commits": 1 } ], "_score": 6.413634997198556, "_indexed": false, "_nocasepkg": "metajam", "_universes": [ "dataoneorg" ], "_indexurl": "https://nceas.r-universe.dev/metajam", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.1.9000", "date": "2026-05-15T09:35:53.000Z", "distro": "noble", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "6f2a33863fef3fde4dbdeaf14dba13b3a60ec58b65a9bc852bf41e4133e091f3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" }, { "r": "4.6.0", "os": "linux", "version": "0.3.1.9000", "date": "2026-05-15T09:36:04.000Z", "distro": "noble", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "b17c511558061f1f1ffcc07bc363e49b4e48a28c23b4dd1aa28257843e2e09c4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" }, { "r": "4.5.3", "os": "mac", "version": "0.3.1.9000", "date": "2026-05-15T09:35:19.000Z", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "872e98281e7a7b54dbeb0f699a01a929e304774ca3aec1f9ef4a9be813ac4877", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" }, { "r": "4.6.0", "os": "mac", "version": "0.3.1.9000", "date": "2026-05-15T09:35:42.000Z", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "eb39f9a1fd022e97c244207584f9ac496e7edd3eef48b790ca83becad112fa37", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" }, { "r": "4.7.0", "os": "win", "version": "0.3.1.9000", "date": "2026-05-15T09:35:47.000Z", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "51c1c926889ff5a8c7d0895904580a671be3fe61c5d1f52f31f34e577d538365", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" }, { "r": "4.5.3", "os": "win", "version": "0.3.1.9000", "date": "2026-05-15T09:34:50.000Z", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "f3cb215ad632e0dca003d2e45aa8d7ffbb1ccd2b71f79261ab3142cd49dd0530", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" }, { "r": "4.6.0", "os": "win", "version": "0.3.1.9000", "date": "2026-05-15T09:35:04.000Z", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "a939394891b92711f38f2d8ce09422d68085144885448984910723dc57223a8e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.1.9000", "date": "2026-06-02T19:25:05.000Z", "commit": "5e743ab1d8bc7fcc4faeafe54696fc331f64f837", "fileid": "39b0570afeb408b08bf60937ff395304a2ac06f847c602d1a584eff305c1322c", "status": "success", "buildurl": "https://github.com/r-universe/dataoneorg/actions/runs/25910668969" } ] }