{
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  "Package": "scythe",
  "Title": "Harvest and register data package citations",
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  "Description": "Harvests data package citations from several API sources,\nincluding PLOS, Scopus, and Springer. This package uses\nmodified functions from `rplos`, which is no longer maintained.",
  "License": "Apache License (>= 2.0)",
  "Encoding": "UTF-8",
  "Remotes": [
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  "Config/pak/sysreqs": "cmake make libicu-dev libsecret-1-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://dataoneorg.r-universe.dev",
  "Date/Publication": "2025-12-05 17:01:56 UTC",
  "RemoteUrl": "https://github.com/DataONEorg/scythe",
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  "_created": "2026-06-03T09:11:10.000Z",
  "_published": "2026-06-03T09:14:17.911Z",
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      "title": "Search for citations in text across all APIs",
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