Overview | Species turnover | Total turnover | Appearances and disappearances | Turnover at Konza | Species rank shifts | Rank clocks: visualizing species rank shifts | Rank clocks at Konza | Mean rank shifts | Rank shifts at Konza | Rate of community change | Rate change at Konza | Citations

Overview | Example dataset | Community stability | Species covariance | Variance ratio | Calculating the variance ratio | Significance testing | General cyclic shift function | Variance ratio and species richness | Species synchrony | Synchrony Option 1: "Loreau" | Synchrony Option 2: "Gross" | Citations

Summary | Note on data url provenance when using download_d1_data() | Metadata format dictates metajam output | Example 1: EML metadata | Libraries and constants | Download the dataset | Read the data and metadata in your R environment | Structure of the named list object | Example 2: ISO metadata

Summary | Libraries | Constants | Download the datasets | Read the data and metadata in your R environment | Perform checks on data structure | Conclusion | Perform checks on the units | Fixing units discrepancies | Append all the sampling sites into one master dataset | General Conclusion

Summary | Libraries and constants | Download the dataset | Read the data and metadata in your R environment | Structure of the named list object

Summary | Libraries and constants | Download the raster dataset | Read the raster file and metadata in your R environment | Investigate the metadata

DataONE Service Interface | New Features in DataONE Version 2.0 | 1. Series Identifiers | 2. DataONE User Authentication Using Tokens | 3. Ability To Update System Metadata | DataONE Environments

dataone R Package Overview | Quick Start | Additional Resources | Acknowledgements

Downloading Data from DataONE | Search all of DataONE For Datasets of Interest | Alternate Approach for DataONE-wide search and download | Download a data package

Using The query Method | Query and return an R list | Return values as a data frame | Using a Simplified Search. | Search just a member node | Filter query results for a specific member node

Overview | Create a Single Object | System Metadata | Access Policy | Create a Collection of Objects | Relationships Between DataObjects | Linking a metadata file with one or more data files using cito:documents | Asserting data provenance relationships between objects | Inserting other (arbitrary) relationships | Describing The Contents of a DataPackage | Saving DataPackage Contents to a File

Overview of the EML hierarchy | Our example: (re)-creating hf205.xml | Our strategy | Attribute Metadata | Data file format | Assembling the dataTable | Coverage metadata | Creating methods | Creating parties | Creating a keywordSet

Summary | Libraries and constants | Download all the datasets from data packages using DOIs

Introduction | Examples

Overview | Add a custom unit to EML | Reading EML: parsing unit information, including custom unit types

Introduction | Uploading A Package Using uploadDataPackage | 1. Create a DataPackage object. | 2. Prepare a metadata file that will describe the files in the package | 3. Create and add a DataObject for each data file | 4. Determine what access your data and metadata should have | 5. Upload the DataPackage | Using a Digital Object Identifier with a package. | Adding Existing DataONE Files To A Package | Uploading Individual Data And Metadata Files | Maintaining Uploaded Datasets | Update the DataONE system metadata for an object (MNode: updateSystemMetadata) | Replace an object with a newer version (MNode: updateObject) | Remove an object from DataONE search

Known Issues With dataone R Package Version 2.0 | Error Using X.509 Certificates | Create new curl package using MacPorts | Create new curl package using HomeBrew

Updating A DataONE Package | 1. Download the package from DataONE | 2. Review package contents. | 3. Modify DataObjects in the package | 4. Upload the modified DataPackage | Updating Metadata For A DataPackage

emld | Installation | Motivation | Reading EML | Writing EML | Working with EML as JSON-LD | As JSON: Query with JQ | As semantic data: SPARQL queries

Usage scenarios | Use: I want to update the metadata in a package with an edited EML file I have on my computer | Use: Mint a DOI for the package | Use: Add a new CSV data file to a package

Abbreviated API overview

Clone package | Get NSF awards | Which in EML

Download a small Data Package | Download a Data Package without the UI | Download multiple Data Packages | Switching between DataONE/LTER Member Nodes

Download package

Create attributes tables | Format custom units | Adding an ORCID to a creator | Quality assurance for data packages

Overview | Using recordr | Recording a Script Execution | Listing Script Executions | Preparing Metdata for a Run | Recording An R Console Session | Viewing Script Executions | Information Collected By The recordr package | Disk usage | Max file size to archive, in bytes | recordr Internals | Customizing Recordr